coda4microbiome: Compositional Data Analysis for Microbiome Studies

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Version: 0.2.4
Depends: R (≥ 3.5.0)
Imports: corrplot, glmnet, plyr, pROC, ggpubr, ggplot2, ComplexHeatmap, circlize, survival, survminer
Suggests: rmarkdown
Published: 2024-07-17
DOI: 10.32614/CRAN.package.coda4microbiome
Author: Malu Calle ORCID iD [aut], Toni Susin ORCID iD [aut, cre], Meritxell Pujolassos ORCID iD [aut]
Maintainer: Toni Susin <toni.susin at upc.edu>
BugReports: https://github.com/malucalle/coda4microbiome/issues
License: MIT + file LICENSE
URL: https://malucalle.github.io/coda4microbiome/
NeedsCompilation: no
In views: CompositionalData
CRAN checks: coda4microbiome results

Documentation:

Reference manual: coda4microbiome.html , coda4microbiome.pdf

Downloads:

Package source: coda4microbiome_0.2.4.tar.gz
Windows binaries: r-devel: coda4microbiome_0.2.4.zip, r-release: coda4microbiome_0.2.4.zip, r-oldrel: coda4microbiome_0.2.4.zip
macOS binaries: r-release (arm64): coda4microbiome_0.2.4.tgz, r-oldrel (arm64): coda4microbiome_0.2.4.tgz, r-release (x86_64): coda4microbiome_0.2.4.tgz, r-oldrel (x86_64): coda4microbiome_0.2.4.tgz
Old sources: coda4microbiome archive

Linking:

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