agcounts 0.6.6
- Prepare agcounts for a CRAN submission
- Fix problem with
GGIR::g.calibrate needing
GGIR::g.inspectfile results.
agcounts 0.6.5
- Update README.md file.
- Update code to allow interaction with data that is read into a
tibble.
- Minor updates to the Shiny app
agcounts 0.6.4
- Updated the agcounts license with KU Copyright and Creative Commons
(CC BY-NC-SA 4.0).
- Changed the parsers to reflect the Python and R package names.
- Created more flexibility for adding a Shiny app theme.
- Extending the
.last_complete_epoch function after
discovering a file that did not find a complete epoch.
agcounts 0.6.3
- Improved test coverage including tests for the Shiny Server
- Removed the Shiny App from the inst folder to only make it a
callable app using
agShinyDeployApp
agcounts 0.6.2
- Update the Shiny rawDataModule UI and Server to filter by AM or PM
to make plotting faster
- Improved test coverage from 19 to 56% by adding tests for the Shiny
UI,
gcalibrateC, get_counts,
agread.
- Updated the test_actilife_counts.R file using a new data set that
was uploaded for
gcalibrateC testing.
agcounts 0.6.1
- Added
start_time and stop_time attributes
to data read by the pygt3x calibrated reader.
- Added
lubridate::floor_date to round data_start in case
data doesn’t start on the specified epoch.
- Updated Shiny app documentation by moving all
importFrom documentation to the
agShinyDeployApp function.
- Deployed the Shiny app to shinyapps.io and contained it in the
inst/agcounts folder.
agcounts 0.6.0
- Developed a Shiny app to allow users to visualize, explore, and
compare activity counts.
- Added the
.calculate_raw_metrics function to calculate
ENMO and MAD for the Shiny App.
- Added the
.read_agd function to extract metadata and
data from the ActiGraph agd file for the Shiny app.
- Changed the use of the bitwise ‘&’ with Boolean operands to
‘&&’ in the gcalibrate.cpp file.
- Updated README.md with the new
agread methods using the
parser argument.
agcounts 0.5.0
- Updated pygt3x python reader (ActiGraph removed the CalibratedReader
class).
- Added a C++ version of the GGIR
g.calibrate function
called agcalibrate to be used within a piping structure
with calculate_counts.
- Removed the agread S3 methods and replaced it with a switch
statement.
- Added options for the user to choose a calibrated or uncalibrated
parser.
- Removed test_calibrated_readers.R file since
agread.ggir and agread.pygt3x are no longer
used.
- Added codecov to the
agcounts package.
agcounts 0.4.0
- Added Github R-CMD-check workflow.
- Created a S3 generic function to extract and handle idle sleep
time.
- Created a S3 generic function to read in the raw acceleration data
using calibrated readers.
- Replaced a for loop in the
.resample function with
Rcpp to reduce processing time.
- Added a package hexagon sticker and updated the README with the
calibrated readers.
- Added a unit test to test the calibrated readers.
agcounts 0.3.0
- Updated documentation for a new release
- Added Paul R. Hibbing as a package contributor.
agcounts 0.2.4
- Added a unit test to ensure the agcounts package and Actilife counts
match
- Added a unit test to check if the output of the algorithm is as
expected
- Added testthat (>= 3.0.0) to the description file.
agcounts 0.2.3
- Changed package namespace to include magrittr as an import
- Fixed the printing order of verbose by changing the magrittr’s pipe
to eager pipe
- Added
dateTimeAs = "write.csv" to the
data.table::fwrite function to correctly display time
stamps when data are exported to csv
- Moved all of the internal functions in agcounts to the helpers.R
file
agcounts 0.2.2
- Swapped in
min in a place where pmin was
incorrectly used
agcounts 0.2.1
- Fixed automatic sampling frequency detection to remove assumption
about file having >= 1000 rows
agcounts 0.2.0
- Split
calculate_counts out of get_counts
to allow more flexible programming for end-users
- Moved the dot functions to internal
- Revised some of the logic for filling in missing timestamps during
count extraction
- Revised some dealings with timezones to try making things more
consistent
- Automated the detection of sampling frequency
agcounts 0.1.0