Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.
Version: | 2.1.2 |
Depends: | R (≥ 3.2) |
Imports: | FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot |
Suggests: | knitr, rmarkdown |
Published: | 2022-07-05 |
DOI: | 10.32614/CRAN.package.EmbedSOM |
Author: | Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph] |
Maintainer: | Mirek Kratochvil <exa.exa at gmail.com> |
License: | GPL (≥ 3) |
URL: | https://github.com/exaexa/EmbedSOM |
NeedsCompilation: | yes |
Citation: | EmbedSOM citation info |
Materials: | README |
CRAN checks: | EmbedSOM results [issues need fixing before 2025-01-10] |
Reference manual: | EmbedSOM.pdf |
Vignettes: |
EmbedSOM basic embedding |
Package source: | EmbedSOM_2.1.2.tar.gz |
Windows binaries: | r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip |
macOS binaries: | r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz |
Old sources: | EmbedSOM archive |
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