Last updated on 2025-01-09 04:49:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 7.39 | 77.29 | 84.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 123.41 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 180.39 | NOTE | |||
| r-devel-windows-x86_64 | 2.0.0 | 10.00 | 116.00 | 126.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 10.18 | 99.75 | 109.93 | ERROR | |
| r-release-linux-x86_64 | 2.0.0 | 9.45 | 99.39 | 108.84 | OK | |
| r-release-macos-arm64 | 2.0.0 | 62.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 90.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 10.00 | 112.00 | 122.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 60.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 133.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 12.00 | 147.00 | 159.00 | OK |
Version: 2.0.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘Matrix’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(demic)
>
> test_check("demic")
$all_ptr
est_ptr coefficient pValue cor correctY
Akk0_001 1.946931 0.3840328 7.840437e-25 0.9970041 3.260867
Akk1_001 2.763177 0.5858478 1.476701e-26 0.9979485 3.321042
Akk2_001 3.449088 0.7136534 5.229909e-31 0.9992274 3.361187
$contigs_ptr
est_ptr coefficient pValue cor correctY
Akk0_001 1.934032 0.3807012 3.318289e-15 0.9972423 3.243614
Akk1_001 2.757366 0.5854557 2.229364e-16 0.9985044 3.304869
Akk2_001 3.455752 0.7157473 1.805515e-19 0.9993814 3.332160
$samples_ptr
NULL
est_ptr coefficient pValue cor correctY
Bfrag0_002 2.061760 0.3699599 1.470163e-36 0.9918912 2.216383
Bfrag1_002 3.043483 0.5690839 3.576654e-49 0.9981767 2.222179
Bfrag2_002 4.204818 0.7343522 1.049070e-51 0.9986483 2.208119
est_ptr coefficient pValue cor correctY
Ecoli0_003 2.002033 0.3747989 7.772208e-31 0.9831266 2.281819
Ecoli1_003 2.849822 0.5655114 6.919224e-41 0.9948793 2.200699
Ecoli2_003 3.898063 0.7346433 1.328567e-43 0.9963760 2.129981
$all_ptr
est_ptr coefficient pValue cor correctY
Sample1 1.577167 0.3978371 8.111920e-37 0.7637339 1.481230
Sample2 2.354320 0.7476431 1.453821e-88 0.9410749 1.588319
Sample3 1.838580 0.5317476 1.621567e-46 0.8202775 1.417947
$contigs_ptr
est_ptr coefficient pValue cor correctY
Sample1 1.562367 0.3889102 1.560983e-24 0.7741394 1.476591
Sample2 2.368934 0.7525763 4.383600e-61 0.9454593 1.575565
Sample3 1.836436 0.5304370 2.220241e-31 0.8244760 1.420649
$samples_ptr
NULL
$all_ptr
est_ptr coefficient pValue cor correctY
Sample1 2.281308 0.6319368 5.251404e-62 0.9775760 0.3235725
Sample2 1.748664 0.4282018 4.980528e-39 0.9244302 0.3799434
Sample3 2.323527 0.6459869 1.588855e-64 0.9803428 0.3075130
$contigs_ptr
est_ptr coefficient pValue cor correctY
Sample1 2.140714 0.6484813 3.256605e-40 0.9793351 0.4159558
Sample2 1.634874 0.4172190 5.662148e-24 0.9152381 0.3929863
Sample3 2.110892 0.6365950 3.532516e-38 0.9784685 0.3878360
$samples_ptr
NULL
structure(list(`(Intercept)` = c(0.122133753095513, 0.112468233560288,
0.0372788404325122, 0.177304339887256, 0.0270507610681736, 0.0842232868459067,
0.106812647682803, 0.162034499737329, 0.14194349045613, 0.138951868657145
), GC_content = c(-0.139377848208212, -0.139377848208212, -0.139377848208212,
-0.139377848208212, -0.139377848208212, -0.139377848208212, -0.139377848208212,
-0.139377848208212, -0.139377848208212, -0.139377848208212),
s_c = c("a:1", "a:2", "b:3", "b:4", "c:5", "c:6", "d:7",
"d:8", "e:9", "e:10")), row.names = c("a:1", "a:2", "b:3",
"b:4", "c:5", "c:6", "d:7", "d:8", "e:9", "e:10"), class = "data.frame")
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 42 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-est_ptr.R:48:3'): DEMIC main function produces correct output on sourceforge data cluster 2 ──
O$contigs_ptr (`actual`) not equal to `EO2` (`expected`).
actual vs expected
correctY
- actual[1, ] 0.4159558
+ expected[1, ] 0.3099378
- actual[2, ] 0.3929863
+ expected[2, ] 0.3779174
- actual[3, ] 0.3878360
+ expected[3, ] 0.3044411
`actual$correctY`: 0.42 0.39 0.39
`expected$correctY`: 0.31 0.38 0.30
[ FAIL 1 | WARN 9 | SKIP 0 | PASS 42 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64