Last updated on 2025-11-06 03:48:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 7.25 | 70.89 | 78.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 5.23 | 50.06 | 55.29 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 63.00 | 64.50 | 127.50 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 50.00 | 71.97 | 121.97 | ERROR | |
| r-devel-windows-x86_64 | 0.0.1 | 10.00 | 80.00 | 90.00 | OK | |
| r-patched-linux-x86_64 | 0.0.1 | 7.99 | 66.17 | 74.16 | OK | |
| r-release-linux-x86_64 | 0.0.1 | 6.86 | 66.08 | 72.94 | OK | |
| r-release-macos-arm64 | 0.0.1 | 3.00 | 43.00 | 46.00 | OK | |
| r-release-macos-x86_64 | 0.0.1 | 10.00 | 64.00 | 74.00 | OK | |
| r-release-windows-x86_64 | 0.0.1 | 9.00 | 77.00 | 86.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.1 | 4.00 | 40.00 | 44.00 | OK | |
| r-oldrel-macos-x86_64 | 0.0.1 | 5.00 | 72.00 | 77.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.1 | 10.00 | 95.00 | 105.00 | OK |
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testOracle.R’ [4s/68s]
Running ‘testPostgres.R’ [4s/67s]
Running ‘testRedshift.R’
Running ‘testSqlServer.R’ [4s/66s]
Running the tests in ‘tests/testOracle.R’ failed.
Complete output:
> library(testthat)
> options(dbms = "oracle")
> test_check("CohortPathways")
Loading required package: CohortPathways
Loading required package: DatabaseConnector
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
************* Testing on oracle *************
Consider adding `DATABASECONNECTOR_JAR_FOLDER='/tmp/RtmpbBGImr/working_dir/RtmpQs8FvB/jdbcDrivers1aef5b4a4c8124'` to /data/gannet/ripley/.Renviron and restarting R.
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Error in `FUN()`:
! In path: "/data/gannet/ripley/R/packages/tests-devel/CohortPathways.Rcheck/tests/testthat/setup.R"
Caused by error in `download.file()`:
! cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. ├─testthat::test_check("CohortPathways")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─DatabaseConnector::downloadJdbcDrivers("postgresql", pathToDriver = jdbcDriverFolder) at tests/testthat/setup.R:18:3
15. │ └─utils::download.file(...)
16. └─base::.handleSimpleError(...)
17. └─testthat (local) h(simpleError(msg, call))
18. └─rlang::abort(...)
Warning message:
In download.file(url = paste0(driverSource$baseUrl, driverSource$fileName), :
URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar': Timeout of 60 seconds was reached
Execution halted
Running the tests in ‘tests/testPostgres.R’ failed.
Complete output:
> library(testthat)
> options(dbms = "postgresql")
> test_check("CohortPathways")
Loading required package: CohortPathways
Loading required package: DatabaseConnector
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
************* Testing on postgresql *************
Consider adding `DATABASECONNECTOR_JAR_FOLDER='/tmp/RtmpbBGImr/working_dir/Rtmp1IFlaB/jdbcDrivers1b1d982e0f51e3'` to /data/gannet/ripley/.Renviron and restarting R.
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Error in `FUN()`:
! In path: "/data/gannet/ripley/R/packages/tests-devel/CohortPathways.Rcheck/tests/testthat/setup.R"
Caused by error in `download.file()`:
! cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. ├─testthat::test_check("CohortPathways")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─DatabaseConnector::downloadJdbcDrivers("postgresql", pathToDriver = jdbcDriverFolder) at tests/testthat/setup.R:18:3
15. │ └─utils::download.file(...)
16. └─base::.handleSimpleError(...)
17. └─testthat (local) h(simpleError(msg, call))
18. └─rlang::abort(...)
Warning message:
In download.file(url = paste0(driverSource$baseUrl, driverSource$fileName), :
URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar': Timeout of 60 seconds was reached
Execution halted
Running the tests in ‘tests/testSqlServer.R’ failed.
Complete output:
> library(testthat)
> options(dbms = "sql server")
> test_check("CohortPathways")
Loading required package: CohortPathways
Loading required package: DatabaseConnector
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
************* Testing on sql server *************
Consider adding `DATABASECONNECTOR_JAR_FOLDER='/tmp/RtmpbBGImr/working_dir/Rtmp43cyDg/jdbcDrivers1b53df3e7b587d'` to /data/gannet/ripley/.Renviron and restarting R.
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Error in `FUN()`:
! In path: "/data/gannet/ripley/R/packages/tests-devel/CohortPathways.Rcheck/tests/testthat/setup.R"
Caused by error in `download.file()`:
! cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. ├─testthat::test_check("CohortPathways")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─DatabaseConnector::downloadJdbcDrivers("postgresql", pathToDriver = jdbcDriverFolder) at tests/testthat/setup.R:18:3
15. │ └─utils::download.file(...)
16. └─base::.handleSimpleError(...)
17. └─testthat (local) h(simpleError(msg, call))
18. └─rlang::abort(...)
Warning message:
In download.file(url = paste0(driverSource$baseUrl, driverSource$fileName), :
URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar': Timeout of 60 seconds was reached
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc