Extract and Analyze EchoMS Data from Sciex Wiff Files
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Documentation for package ‘rtmsEcho’ version 0.2.4
Help Pages
| exampleWiff | Example wiff reader object |
| getAllFullScanAreas | Get the total area for given masses for all wells |
| getAllFullScanSpectra | Extract mass spectra for all wells |
| getAllMRMAreas | Extract the peak areas for MRM mass transitions for all wells |
| getAllTIC | Extract all total ion chromatograms from a Wiff file |
| getFullScanAreas | Get the total area for given masses for a particular well |
| getFullScanData | Extract raw Wiff full scan data |
| getFullScanSpectrum | Extract a full mass spectrum for a given well |
| getMRMAreas | Extract the peak areas for MRM mass transitions for a given well |
| getMRMChromatograms | Extract full chromatograms for each mass transition |
| getTIC | Extract a total ion chromatogram (TIC) from a Wiff file |
| getWiffShots | List of Shot Names in a given Wiff File |
| measureEjections | Measure total ion chromatogram peaks to estimate ejection time |
| measureEjections.default | Measure total ion chromatogram peaks to estimate ejection time |
| measureEjections.rtmsWiffReader | Measure total ion chromatogram peaks to estimate ejection time |
| newWiffReader | Open a Sciex EchoMS wiff File for Reading |
| processAllFullScanAreas | Fully process a Full Scan Wiff and scan File |
| processAllMRMAreas | Process an MRM file in total |