| distmat | Calculate scSLAM-seq based distance matrices |
| Hetseq | Heterogeneity-seq wrapper |
| HetseqClassify | Heterogeneity-seq: Classifying cellular response by gene expression values |
| HetseqDoubleML | Heterogeneity-seq: Classifying cellular response by gene expression values including causal inference by DoubleML |
| HetseqTest | Heterogeneity-seq: Testing for differential gene expression |
| mincostflow | Min-Cost-Max-Flow for cellular trajectories |
| PlotClassify | Plot Heterogeneity-seq Classifier Results |
| PlotDoubleML | Plot Heterogeneity-seq DoubleML Results |
| prune | Prune trajectories |