EDGE                    Evolutionary Distinctiveness and Global
                        Endangerment
PD                      Phylogenetic diversity
PD_ses                  Phylogenetic diversity standardized for species
                        richness
africa                  Plants of southern Africa
arc_labels              Add arc labels to plotted phylogeny
backg                   Sample background points
beta_core               Taxonomic (non-phylogenetic) beta diversity
choropleth              Bin values
coldspots               Computes biodiversity coldspots and hotspots
collapse_range          Collapse nodes and ranges based on divergence
                        times
counts                  Phyloregions for functional traits and
                        phylogeny
dirpath                 Get current directory
evol_distinct           Species' evolutionary distinctiveness
fishnet                 Create fishnet of regular grids
fitgom                  Fits Grade of membership models for
                        biogeographic regionalization
functional_beta         Functional beta diversity for mixed-type
                        functional traits
get_clades              Get descendant nodes of phylogeny at a given
                        time depth
hexcols                 Generate diverging colors in HCL colour space.
indicators              Top driving species in phyloregions
long2sparse             Conversion of community data
map_trait               Map species' trait values in geographic space
match_phylo_comm        Match taxa and in phylogeny and community
                        matrix
mean_dist               Mean distance matrix from a set of distance
                        matrices
nodepie                 Label phylogenetic nodes using pie
optimal_phyloregion     Determine optimal number of clusters
phylo_endemism          Phylogenetic Endemism
phylobeta_core          Phylogenetic beta diversity
phylobeta_ses           Phylogenetic beta diversity standardized for
                        species beta diversity
phylobuilder            Create a subtree with largest overlap from a
                        species list.
phyloregion             Compute phylogenetic regionalization and
                        evolutionary distinctiveness of phyloregions
plot.phyloregion        Visualize biogeographic patterns
plot.sparse             Create illustrative sparse matrix
plot_spatial_membership
                        Visualize spatial memberships
random_species          Generate random species distributions in space
rast2comm               Convert raw input distribution data to
                        community
rast_quantile           Standardizes raster values for mapping
read.community          Read in sparse community matrices
sdm                     Fast species distribution model
select_linkage          Cluster algorithm selection and validation
selectbylocation        Select polygon features from another layer and
                        adds polygon attributes to layer
timeslice               Slice phylogenetic tree at various time depths
tree_sampler            Subset trees from posterior distribution of
                        trees.
unifrac                 UniFrac distance
weighted_endemism       Measure the distribution of narrow-ranged or
                        endemic species.
