EstParam                Access Model Fitting Parameters
SRTsim_shiny            Run the SRTsim Shiny Application
Shiny2SRT               Create a SRTsim object from reference-free
                        shinyoutput
compareSRT              Summarize metrics for reference data and
                        synthetic data
convert_grid            Convert continuous coordinate into integer,
                        essential for BayesSpace to determine the
                        neighborhood info
createSRT               Create simSRT object
exampleLIBD             Data used for creating vignettes
fit_pos_optim           fitting data with poisson through optim
                        function
get_metrics_pd          Extracted summarized metrics for reference data
                        and synthetic data
get_stats_gene          Summarize gene-wise summary metrics
get_stats_loc           Summarize location-wise summary metrics
metaParam               Access User-Specified Parameters
reGenCountshiny         ReSimulate Count Data with Parameters
                        Specification from Shiny
refCounts               Access reference count matrix
refcolData              Access reference colData
refrowData              Access reference rowData
simCounts               Access synthetic count matrix
simNewLocs              Fit the marginal distributions for single gene
simcolData              Access synthetic colData
simrowData              Access synthetic rowData
srtsim_cci_free         Generate Data with Cell-Cell Interaction Under
                        Reference-Free Mode
srtsim_cci_ref          Generate Data with Cell-Cell Interaction Under
                        Reference-Based Mode
srtsim_count            Generate Data with Estimated Parameters
srtsim_count_affine     Generate Data with Estimated Parameters For A
                        New Designed Pattern
srtsim_fit              Fit the marginal distributions for each row of
                        a count matrix
srtsim_newlocs          Fit the marginal distributions for each row of
                        a count matrix
subsetSRT               Subset SRT object based on domain labels of
                        interest
toyData                 A toyExample to showcase reference-based
                        simulations
toyShiny                A toyExample to showcase reference-free
                        simulations
visualize_gene          Visualize expression pattern for the gene of
                        interest in reference data and synthetic data
visualize_metrics       Visualize summarized metrics for reference data
                        and synthetic data
