"Risk Model Regression and Analysis with Complex Non-Linear Models"

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Documentation for package ‘Colossus’ version 1.4.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

apply_norm	Automatically applies a normalization to either an input or output
CaseControlRun	Fully runs a case-control regression model, returning the model and results
Check_Iters	Automatically checks the number of starting guesses
ColossusCoxSurv	Interprets basic cox survival formula RHS
ColossusLogitSurv	Interprets basic logistic survival formula RHS with no grouping
ColossusPoisSurv	Interprets basic poisson survival formula RHS
CoxRun	Fully runs a cox or fine-gray regression model, returning the model and results
CoxRunMulti	Fully runs a cox or fine-gray regression model with multiple column realizations, returning the model and results
Date_Shift	Automates creating a date difference column
EventAssignment	Generic background/excess event calculation function
EventAssignment.default	Predicts how many events are due to baseline vs excess
EventAssignment.poisres	Predicts how many events are due to baseline vs excess for a completed poisson model
Event_Count_Gen	uses a table, list of categories, and list of event summaries to generate person-count tables
Event_Time_Gen	uses a table, list of categories, list of summaries, list of events, and person-year information to generate person-time tables
factorize	Splits a parameter into factors
gen_time_dep	Applies time dependence to parameters
get_form	Interprets a Colossus formula and makes necessary changes to data
get_form_joint	Interprets a Poisson joint formula and makes necessary changes to data
Joint_Multiple_Events	Automates creating data for a joint competing risks analysis
LikelihoodBound	Generic likelihood boundary calculation function
LikelihoodBound.coxres	Calculates the likelihood boundary for a completed cox model
LikelihoodBound.default	Generic likelihood boundary calculation function, default option
LikelihoodBound.poisres	Calculates the likelihood boundary for a completed Poisson model
Likelihood_Ratio_Test	Defines the likelihood ratio test
Linked_Dose_Formula	Calculates Full Parameter list for Special Dose Formula
Linked_Lin_Exp_Para	Calculates The Additional Parameter For a linear-exponential formula with known maximum
LogisticRun	Fully runs a logistic regression model, returning the model and results
OMP_Check	Checks the OMP flag
plot.coxres	Performs Cox Proportional Hazard model plots
PoisRun	Fully runs a poisson regression model, returning the model and results
PoisRunJoint	Fully runs a joint poisson regression model, returning the model and results
PoisRunMulti	Fully runs a poisson regression model with multiple column realizations, returning the model and results
print.caseconres	Prints a case-control regression output clearly
print.coxres	Prints a cox regression output clearly
print.coxresbound	Prints a cox likelihood boundary regression output clearly
print.logitres	Prints a logistic regression output clearly
print.poisres	Prints a poisson regression output clearly
print.poisresbound	Prints a poisson likelihood boundary regression output clearly
RelativeRisk	Generic relative risk calculation function
RelativeRisk.coxres	Calculates hazard ratios for a reference vector
RelativeRisk.default	Generic relative risk calculation function, default option
Replace_Missing	Automatically assigns missing values in listed columns
Residual	Generic Residual calculation function
Residual.default	Generic Residual calculation function, default option
Residual.poisres	Calculates the Residuals for a completed poisson model
RunCaseControlRegression_Omnibus	Performs Matched Case-Control Conditional Logistic Regression
RunCoxRegression_Omnibus	Performs Cox Proportional Hazards regression using the omnibus function
RunLogisticRegression_Omnibus	Performs basic Logistic regression using the omnibus function
RunPoissonRegression_Omnibus	Performs basic Poisson regression using the omnibus function
System_Version	Checks OS, compilers, and OMP
Time_Since	Automates creating a date since a reference column