EDGE                    Evolutionary Distinctiveness and Global
                        Endangerment
PD                      Phylogenetic diversity
PD_ses                  Phylogenetic diversity standardized for species
                        richness
africa                  Plants of southern Africa
arc_labels              Add arc labels to plotted phylogeny
beta_core               Taxonomic (non-phylogenetic) beta diversity
coldspots               Computes biodiversity coldspots and hotspots
collapse_range          Collapse nodes and ranges based on divergence
                        times
counts                  Phyloregions for functional traits and
                        phylogeny
evol_distinct           Species' evolutionary distinctiveness
fishnet                 Create fishnet of regular grids
fitgom                  Fits Grade of membership models for
                        biogeographic regionalization
functional_beta         Functional beta diversity for mixed-type
                        functional traits
get_clades              Get descendant nodes of phylogeny at a given
                        time depth
hexcols                 Generate diverging colors in HCL colour space.
indicators              Top driving species in phyloregions
long2sparse             Conversion of community data
map_trait               Map species' trait values in geographic space
match_phylo_comm        Match taxa and in phylogeny and community
                        matrix
mean_dist               Mean distance matrix from a set of distance
                        matrices
nodepie                 Label phylogenetic nodes using pie
optimal_phyloregion     Determine optimal number of clusters
phylo_endemism          Phylogenetic Endemism
phylobeta_core          Phylogenetic beta diversity
phylobeta_ses           Phylogenetic beta diversity standardized for
                        species beta diversity
phylobuilder            Create a subtree with largest overlap from a
                        species list.
phyloregion             Compute phylogenetic regionalization and
                        evolutionary distinctiveness of phyloregions
phyloregion-package     Biogeographic regionalization and macroecology
plot.phyloregion        Visualize biogeographic patterns
plot.sparse             Create illustrative sparse matrix
plot_pie                Visualize biogeographic patterns using pie
                        charts
random_species          Generate random species distributions in space
rast2comm               Convert raw input distribution data to
                        community
read.community          Read in sparse community matrices
sdm                     Species distribution models
select_linkage          Cluster algorithm selection and validation
selectbylocation        Select polygon features from another layer and
                        adds polygon attributes to layer
timeslice               Slice phylogenetic tree at various time depths
unifrac                 UniFrac distance
weighted_endemism       Measure the distribution of narrow-ranged or
                        endemic species.
